:: DESCRIPTION
Chiron is a server that rapidly minimizes steric clashes in proteins using short discrete molecular dynamics(DMD) simulations.
::DEVELOPER
Clemson Computational Biophysics Lab , Dokholyan Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Proteins. 2011 Jan;79(1):261-70. doi: 10.1002/prot.22879.
Automated minimization of steric clashes in protein structures.
Ramachandran S1, Kota P, Ding F, Dokholyan NV.
:: DESCRIPTION
SPOUSE (statistical potential based on unfolded state ensemble) is a freely distributed program for calculating protein energy for selected chain.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Biophys J. 2012 Nov 7;103(9):1950-9. doi: 10.1016/j.bpj.2012.09.023.
Using the unfolded state as the reference state improves the performance of statistical potentials.
Liu Y1, Gong H.
:: DESCRIPTION
eProS (Enery Profile Suite)is a database and toolbox for calculation, analysis, comparison and prediction of protein energy profiles
::DEVELOPER
BioInformatics Group Mittweida
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
eProS–a database and toolbox for investigating protein sequence-structure-function relationships through energy profiles.
Heinke F, Schildbach S, Stockmann D, Labudde D.
Nucleic Acids Res. 2013 Jan;41(Database issue):D320-6. doi: 10.1093/nar/gks1079.
:: DESCRIPTION
CLEVER (Cluster Expansion) is an open-source package that can be used to convert any user-provided energy function into a linear combination of sequence-based terms.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Methods Enzymol. 2013;523:171-90. doi: 10.1016/B978-0-12-394292-0.00008-4.
Multistate protein design using CLEVER and CLASSY.
Negron C, Keating AE.