CleaveLand 4.5
:: DESCRIPTION
CleaveLand is a command-line executed pipeline for finding cleaved small RNA targets using degradome data (also known as PARE [parallel analysis of RNA ends] and GMUCT [genome-wide mapping of uncapped transcripts]). Provided with a set of degradome data, a list of small RNA queries, a reference transcriptome/mRNA set, CleaveLand outputs potentially cleaved small RNA targets along with other supporting information.
::DEVELOPER
Axtell Lab @ Penn State
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows / MacOsX
- Perl
- Targetfinder
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Addo-Quaye, C., Miller, W., and Axtell, M.J. (2009).
CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets.
Bioinformatics 25: 130-131.