CleaveLand 4.5

:: DESCRIPTION

CleaveLand is a command-line executed pipeline for finding cleaved small RNA targets using degradome data (also known as PARE [parallel analysis of RNA ends] and GMUCT [genome-wide mapping of uncapped transcripts]).  Provided with a set of degradome data, a list of small RNA queries, a reference transcriptome/mRNA set, CleaveLand outputs potentially cleaved small RNA targets along with other supporting information.

::DEVELOPER

Axtell Lab @ Penn State

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / MacOsX
• Perl
• Targetfinder

:: DOWNLOAD

 CleaveLand

:: MORE INFORMATION

Citation:

Addo-Quaye, C., Miller, W., and Axtell, M.J. (2009).
CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets.
Bioinformatics 25: 130-131.