Tag: Characterizing

FuncAssociate 2.0 – Gene Sets Characterizing & Functional Trend Analysis

FuncAssociate 2.0

:: DESCRIPTION

FuncAssociate is a web application that discovers properties enriched in lists of genes or proteins that emerge from large-scale experimentation. FuncAssociate takes a list of genes as input and produces a ranked list of the Gene Ontology terms enriched in an input list.

::DEVELOPER

Roth Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python/Perl

:: DOWNLOAD

 FuncAssociate

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Nov 15;25(22):3043-4. doi: 10.1093/bioinformatics/btp498. Epub 2009 Aug 28.
Next generation software for functional trend analysis.
Berriz GF, Beaver JE, Cenik C, Tasan M, Roth FP.

Dynamical Network Analysis – Characterizing Allosteric Signalling through Biomolecular Complexes

Dynamical Network Analysis

:: DESCRIPTION

Dynamical Network Analysis is a method of characterizing allosteric signalling through biomolecular complexes.

::DEVELOPER

The Luthey-Schulten Group – University of Illinois at Urbana-Champaign

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX

:: DOWNLOAD

  Dynamical Network Analysis

:: MORE INFORMATION

Citation

Dynamical networks in tRNA:protein complexes.
Sethi A, Eargle J, Black AA, Luthey-Schulten Z.
Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6620-5