:: DESCRIPTION
Cassis is a software for precise detection of rearrangement breakpoints in whole (sequenced and assembled) genomes.
::DEVELOPER
Cassis team
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Baudet, C., Lemaitre, C., Dias, Z., Tannier, E., Tannier, E., Gautier, C., and Sagot, M.-F. (2010).
Cassis : precise detection of genomic rearrangement breakpoints.
Bioinformatics, 26(15), 1897-1898.
:: DESCRIPTION
CASSIS (cluster assignment by islands of sites) is a tool to predict secondary metabolite (SM) gene clusters around a given anchor (or backbone) gene.
SMIPS (secondary metabolites by InterProScan) is a tool to predict secondary metabolite (SM) anchor genes, also called SM backbone genes, in protein sequences.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
CASSIS and SMIPS: Promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.
Wolf T, Shelest V, Nath N, Shelest E.
Bioinformatics. 2015 Dec 9. pii: btv713.
