:: DESCRIPTION
mpiCUDA-BLASTP is designed to accelerate BLASTP for scanning protein sequence databases on GPU clusters, programmed using CUDA, MPI, and OpenMP programming models.
::DEVELOPER
Liu Weiguo (liuweiguo@ntu.edu.sg).
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
CUDA-BLASTP is designed to accelerate NCBI BLAST for scanning protein sequence databases by taking advantage of the massively parallel CUDA architecture of NVIDIA Tesla GPUs. CUDA-BLASTP also has a utility to convert FASTA format database into files readable by CUDA-BLASTP.
::DEVELOPER
Parallel and Distributed Architectures
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig:
“CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware“.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8(6): 1678-1684
