mpiCUDA-BLASTP is designed to accelerate BLASTP for scanning protein sequence databases on GPU clusters, programmed using CUDA, MPI, and OpenMP programming models.
CUDA-BLASTP is designed to accelerate NCBI BLAST for scanning protein sequence databases by taking advantage of the massively parallel CUDA architecture of NVIDIA Tesla GPUs. CUDA-BLASTP also has a utility to convert FASTA format database into files readable by CUDA-BLASTP.