BEnDS – Binding Energy Distribution Simulator

BEnDS

:: DESCRIPTION

BEnDS can generate random binding energy matrices and simulate binding probabilities of DNA sequences.

::DEVELOPER

Stormo Lab in Department of Genetics, Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

BEnDS

:: MORE INFORMATION

Citation

Ruan S, Stormo GD.
Inherent limitations of probabilistic models for protein-DNA binding specificity.
PLoS Comput Biol. 2017 Jul 7;13(7):e1005638. doi: 10.1371/journal.pcbi.1005638