Tag: Assumption

PKreport 1.5 – Reporting Pipeline for Checking Population Pharmacokinetic Model Assumption

PKreport 1.5

:: DESCRIPTION

PKreport aims to 1) provide automatic pipeline for users to visualize data and models. It creates a flexible R framework with automatically generated R scripts to save time and cost for later usage; 2) implement an archive-oriented management tool for users to store, retrieve and modify figures. 3) offer powerful and convenient service to generate high-quality graphs based on two R packages: lattice and ggplot2.

::DEVELOPER

Xiaoyong Sun <johnsunx1 at gmail.com>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows /MacOsX
  • R

:: DOWNLOAD

 PKreport

:: MORE INFORMATION

Citation:

BMC Med Inform Decis Mak. 2011 May 16;11:31. doi: 10.1186/1472-6947-11-31.
PKreport: report generation for checking population pharmacokinetic model assumptions.
Sun X1, Li J.

PI 2.0 – Test the Assumption of Phylogenetic Independence

PI 2.0

:: DESCRIPTION

PI ( Phylogenetic Independence) is a program  to conduct the Test For Serial Independence (TFSI) on continuously valued characters and the Runs Test on discretely valued characters (Abouheif 1999). The TFSI and Runs Test are used to test the assumption of phylogenetic independence within a set of comparative data, i.e., to test whether a trait is significantly associated with its phylogenetic history. This version of the program can perform the TFSI and Runs Test using either fully resolved phylogenetic trees or an unresolved trees (i.e. one with polytomies).

::DEVELOPER

Jeff Reeve and Ehab Abouheif

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

PI for win , for Linux

:: MORE INFORMATION

Citation:

Abouheif, E (1999)
A method for testing the assumption of phylogenetic independence in comparative data
Evolutionary Ecology Research 1: 895-909