FAPI 0.1 – Fast and Accurate P-value Imputation for Genetic Association

FAPI 0.1

:: DESCRIPTION

FAPI is a powerful multi-thread Java-based application developed to infer p-values of untyped Single-nucleotide polymorphisms (SNPs) through p-values of SNPs in LD with the untyped one. With similar imputation accuracy to other genotype imputation tools (including IMPUTEand MACH), FAPI is superfast, without requiring phases of reference genotypes and any sample raw genotypes.

::DEVELOPER

Precision Medicine Genomics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

  FAPI

:: MORE INFORMATION

Citation

Eur J Hum Genet. 2016 May;24(5):761-6. doi: 10.1038/ejhg.2015.190. Epub 2015 Aug 26.
FAPI: Fast and accurate P-value Imputation for genome-wide association study
Johnny S H Kwan, Miao-Xin Li, Jia-En Deng , Pak C Sham

PI 2.0 – Test the Assumption of Phylogenetic Independence

PI 2.0

:: DESCRIPTION

PI ( Phylogenetic Independence) is a program  to conduct the Test For Serial Independence (TFSI) on continuously valued characters and the Runs Test on discretely valued characters (Abouheif 1999). The TFSI and Runs Test are used to test the assumption of phylogenetic independence within a set of comparative data, i.e., to test whether a trait is significantly associated with its phylogenetic history. This version of the program can perform the TFSI and Runs Test using either fully resolved phylogenetic trees or an unresolved trees (i.e. one with polytomies).

::DEVELOPER

Jeff Reeve and Ehab Abouheif

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

PI for win , for Linux

:: MORE INFORMATION

Citation:

Abouheif, E (1999)
A method for testing the assumption of phylogenetic independence in comparative data
Evolutionary Ecology Research 1: 895-909