Apollo 2.6.5 – Genome Annotation Viewer & Editor

Apollo 2.6.5

:: DESCRIPTION

Apollo is the first instantaneous, collaborative genomic annotation editor available on the Web.

Web Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process.

::DEVELOPER

Apollo team

:: SCREENSHOTS

:: REQUIREMENTS

Mac OsX / Linux /Solaris / Unix
Tomcat
Perl
BioPerl
Blat
JAVA

:: DOWNLOAD

Apollo

:: MORE INFORMATION

Citation:

Dunn NA, Unni DR, Diesh C, Munoz-Torres M, Harris NL, Yao E, Rasche H, Holmes IH, Elsik CG, Lewis SE.
Apollo: Democratizing genome annotation.
PLoS Comput Biol. 2019 Feb 6;15(2):e1006790. doi: 10.1371/journal.pcbi.1006790. PMID: 30726205; PMCID: PMC6380598.

ApolloRNA 1.11.8 – Apollo for non Protein Coding RNA (ncRNA) Identification

ApolloRNA 1.11.8

:: DESCRIPTION

ApolloRNA is an extension for ncRNA identification of the Apollo environment , a genome annotation viewer and editor.

::DEVELOPER

the Biometry and Artificial Intelligence Laboratory of INRA Toulouse, France

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Mac OsX / Linux
JAVA
Apollo
Vienna RNA

:: DOWNLOAD

ApolloRNA

:: MORE INFORMATION

Citation:

Cros MJ, Moisan A, Cierco-Ayrolles C, Gaspin C.
Visualizing and exploring genomic information for non-protein-coding RNA identification using ApolloRNA.
Nature Protocols. (2007) doi: 10.1036/nprot.20.07.285.

APOLLO – Assess Protein Single or Multiple Model(s)

APOLLO

:: DESCRIPTION

APOLLO pairwise is a program to assess the quality of a pool of structure models predicted for a protein. Teh software evaluates the absolute and/or relative qualities of multiple models or a single model

::DEVELOPER

Dr. Jianlin Cheng

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

APOLLO

:: MORE INFORMATION

Citation

Zheng Wang, Jesse Eickholt, and Jianlin Cheng, (2011)
APOLLO: A Quality Assessment Service for Single and Multiple Protein Models,
Bioinformatics, 27(12), 1715-1716.