Tag: Algebraic Rearrangement

CSAR / Multi-CSAR – Contig Scaffolding tool using Algebraic Rearrangements

CSAR / Multi-CSAR

:: DESCRIPTION

CSAR is a contig scaffolding tool that can efficiently and accurately scaffold the contigs of a draft genome (i.e., target genome) based on an incomplete reference genome of a related organism.

Multi-CSAR is a multiple reference-based contig scaffolder using algebraic rearrangements

::DEVELOPER

Chin Lung Lu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • PHP

:: DOWNLOAD

CSAR / Multi-CSAR

:: MORE INFORMATION

Citation

Chen KT, Shen HT, Lu CL.
Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements.
BMC Syst Biol. 2018 Dec 31;12(Suppl 9):139. doi: 10.1186/s12918-018-0654-y. PMID: 30598087; PMCID: PMC6311912.

Chen KT, Lu CL.
CSAR-web: a web server of contig scaffolding using algebraic rearrangements.
Nucleic Acids Res. 2018 Jul 2;46(W1):W55-W59. doi: 10.1093/nar/gky337. PMID: 29733393; PMCID: PMC6030906.

Chen KT, Liu CL, Huang SH, Shen HT, Shieh YK, Chiu HT, Lu CL.
CSAR: a contig scaffolding tool using algebraic rearrangements.
Bioinformatics. 2018 Jan 1;34(1):109-111. doi: 10.1093/bioinformatics/btx543. PMID: 28968788.