Tag: ACES

ACES v.1.2 – Analysis of Conservation with an Extensive list of Species

ACES v.1.2

:: DESCRIPTION

ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.

::DEVELOPER

TNTurnerLab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Java
  • Docker
:: DOWNLOAD

ACES

:: MORE INFORMATION

Citation

Padhi EM, Ng JK, Mehinovic E, Sams EI, Turner TN.
ACES: Analysis of Conservation with an Extensive list of Species.
Bioinformatics. 2021 Oct 2;37(21):3920–2. doi: 10.1093/bioinformatics/btab684. Epub ahead of print. PMID: 34601580; PMCID: PMC8570785.

ACES – Machine Learning Toolbox for Clustering analysis and Visualization

ACES

:: DESCRIPTION

ACES is a machine learning toolbox for clustering analysis and visualization of both biological data and other types data. Given the biological data or their distance/probability matrix, ACES can automatically extract the features of each identity and cluster them by various widely used clustering algorithms.

::DEVELOPER

Grabherr Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows
  • Java

:: DOWNLOAD

ACES

:: MORE INFORMATION

Citation

Gao J, Sundström G, Moghadam BT, Zamani N, Grabherr MG.
ACES: a machine learning toolbox for clustering analysis and visualization.
BMC Genomics. 2018 Dec 27;19(1):964. doi: 10.1186/s12864-018-5300-y. PMID: 30587115; PMCID: PMC6307290.