:: DESCRIPTION
REAGO is an assembly tool for 16S ribosomal RNA recovery from metagenomic data
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Reconstructing 16S rRNA genes in metagenomic data.
Yuan C, Lei J, Cole J, Sun Y.
Bioinformatics. 2015 Jun 15;31(12):i35-i43. doi: 10.1093/bioinformatics/btv231.
:: DESCRIPTION
iVikodak (a word derived from Sanskrit language, which refers to ‘Decoder’) is a multi-modular web-platform that hosts a logically inter-connected repertoire of functional inference and analysis tools, coupled with a comprehensive visualization interface.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nagpal S, Haque MM, Singh R, Mande SS.
iVikodak-A Platform and Standard Workflow for Inferring, Analyzing, Comparing, and Visualizing the Functional Potential of Microbial Communities.
Front Microbiol. 2019 Jan 14;9:3336. doi: 10.3389/fmicb.2018.03336. PMID: 30692979; PMCID: PMC6339920.
Vikodak – A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets.
Nagpal S, Haque MM, Mande SS.
PLoS One. 2016 Feb 5;11(2):e0148347. doi: 10.1371/journal.pone.0148347.
:: DESCRIPTION
CLUSTOM-CLOUD that is categorized into hierarchical clustering approach is a program for clustering high-throughput 16S sequences with user-defined thresholds.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Oh J, Choi CH, Park MK, Kim BK, Hwang K, Lee SH, Hong SG, Nasir A, Cho WS, Kim KM.
CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.
PLoS One. 2016 Mar 8;11(3):e0151064. doi: 10.1371/journal.pone.0151064. PMID: 26954507; PMCID: PMC4783016.
CLUSTOM: a novel method for clustering 16S rRNA next generation sequences by overlap minimization.
Hwang K, Oh J, Kim TK, Kim BK, Yu DS, Hou BK, Caetano-Anollés G, Hong SG, Kim KM.
PLoS One. 2013 May 1;8(5):e62623. doi: 10.1371/journal.pone.0062623
:: DESCRIPTION
Megraft is a software package that grafts SSU (small subunit) fragments onto full-length SSU sequences, accounting for observed and unobserved variability, for accurate assessment of species richness and sequencing depth in metagenomics endeavors.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Res Microbiol. 2012 Jul;163(6-7):407-12. doi: 10.1016/j.resmic.2012.07.001. Epub 2012 Jul 21.
Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.
Bengtsson J, Hartmann M, Unterseher M, Vaishampayan P, Abarenkov K, Durso L, Bik EM, Garey JR, Eriksson KM, Nilsson R
