REAGO 1.1 – REconstruct 16S ribosomal RNA Genes from MetagenOmic data

REAGO 1.1

:: DESCRIPTION

REAGO is an assembly tool for 16S ribosomal RNA recovery from metagenomic data

::DEVELOPER

Cheng Yuan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

REAGO

:: MORE INFORMATION

Citation

Reconstructing 16S rRNA genes in metagenomic data.
Yuan C, Lei J, Cole J, Sun Y.
Bioinformatics. 2015 Jun 15;31(12):i35-i43. doi: 10.1093/bioinformatics/btv231.

Tarsier – Testing and Analysing RNA gene Software, Including Evolutionary Relationships

Tarsier

:: DESCRIPTION

Tarsier is a software pipeline for testing RNA gene prediction programs with genomic alignments. It automatically gathers RNA data from Rfam and genomic alignments from both UCSC and Ensembl, and executes two popular prediction programs, EvoFold and RNAz.

::DEVELOPER

Whelan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX

:: DOWNLOAD

contact with the author

:: MORE INFORMATION