SWCuda 1.92 – CUDA compatible for Smith-Waterman Sequence Alignment

SWCuda 1.92

:: DESCRIPTION

SWCuda (SmithWaterman-CUDA)allows to perform alignments between one or more sequences and a database (all the sequences, even in the DB, are intended to be proteinic). It is implemented in the recently released CUDA programming environment by NVidia.

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::DEVELOPER

Svetlin A. Manavski, Giorgio Valle,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler
  • NVIDIA CUDA SDK

:: DOWNLOAD

  SWCuda

:: MORE INFORMATION

Citation

Svetlin A. Manavski, Giorgio Valle,
“CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment“,
BMC Bioinformatics 2008, 9(Suppl 2):S10 (26 March 2008)