SPEID

:: DESCRIPTION

SPEID is a deep neural network (implemented in Python, based on the Theano and Keras libraries) designed for predicting enhancer-promoter interactions (EPIs) directly from sequence data.

::DEVELOPER

Ma Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / MacOsX
• Python

:: DOWNLOAD

SPEID

:: MORE INFORMATION

Citation

Singh, Shashank, Yang, Yang, Poczos, Barnabas, and Ma, Jian.
Predicting Enhancer-Promoter Interaction from Genomic Sequence with Deep Neural Networks.
bioRxiv (2016): 085241.