SPEID – Predict enhancer-promoter interactions based on Sequence-based features

SPEID

:: DESCRIPTION

SPEID is a deep neural network (implemented in Python, based on the Theano and Keras libraries) designed for predicting enhancer-promoter interactions (EPIs) directly from sequence data.

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::DEVELOPER

Ma Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python

:: DOWNLOAD

SPEID

:: MORE INFORMATION

Citation

Singh, Shashank, Yang, Yang, Poczos, Barnabas, and Ma, Jian.
Predicting Enhancer-Promoter Interaction from Genomic Sequence with Deep Neural Networks.
bioRxiv (2016): 085241.

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