SANS / SANSparallel 2.3 – Interactive Homology Search against Uniprot

SANS / SANSparallel 2.3

:: DESCRIPTION

SANS is a program for searching protein sequence databases. It is as sensitive as BLAST when sequence identity is 50-100 %. SANS is faster than BLAST in batch mode. For example, a bacterial genome can be compared to Uniprot in one hour compared to 100 hours by BLAST.

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SANSparallel takes a protein sequence as input and returns a set of similar sequences from Uniprot databases.

::DEVELOPER

Liisa Holm’s Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SANSparallel

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Sep 15;28(18):i438-i443. doi: 10.1093/bioinformatics/bts417.
SANS: high-throughput retrieval of protein sequences allowing 50% mismatches.
Koskinen JP1, Holm L.

Nucleic Acids Res. 2015 Apr 8. pii: gkv317.
SANSparallel: interactive homology search against Uniprot.
Somervuo P, Holm L.