:: DESCRIPTION
The Uniprot DAT File Parser can read a Uniprot (IPI) .Dat file and parse out the information for each entry, creating a tab delimited text file. Uniprot .Dat files can be obtained from EBI’s FTP site.
::DEVELOPER
Biological MS Data and Software Distribution Center , Pacific Northwest National Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SANS is a program for searching protein sequence databases. It is as sensitive as BLAST when sequence identity is 50-100 %. SANS is faster than BLAST in batch mode. For example, a bacterial genome can be compared to Uniprot in one hour compared to 100 hours by BLAST.
SANSparallel takes a protein sequence as input and returns a set of similar sequences from Uniprot databases.
::DEVELOPER
Liisa Holm’s Bioinformatics Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Sep 15;28(18):i438-i443. doi: 10.1093/bioinformatics/bts417.
SANS: high-throughput retrieval of protein sequences allowing 50% mismatches.
Koskinen JP1, Holm L.
Nucleic Acids Res. 2015 Apr 8. pii: gkv317.
SANSparallel: interactive homology search against Uniprot.
Somervuo P, Holm L.
:: DESCRIPTION
ENZYMAP is a technique to characterize and predict EC number changes based on metadata from UniProt/Swiss-Prot using a supervised learning approach.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot.
Silveira Sde A, de Melo-Minardi RC, da Silveira CH, Santoro MM, Meira W Jr.
PLoS One. 2014 Feb 19;9(2):e89162. doi: 10.1371/journal.pone.0089162.
