kGEM 0.7 / ERIF 1.0 – Reconstructing a Viral population from Single-Amplicon reads

kGEM 0.7 / ERIF 1.0

:: DESCRIPTION

kGEM (k-Genotype Expectation Maximization algorithm) tool finds haplotypes for Single-amplicon sequencing data. This tool requires aligned reads in special internal format and auxiliary program ERIF could help to convert reads in this format either from fasta (unaligned) format or from SAM (pairwise alignment) format.

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::DEVELOPER

Georgia State University NGS Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java

:: DOWNLOAD

 kGEM / ERIF

:: MORE INFORMATION