:: DESCRIPTION
NJtandem is a program to reconstruct tandem duplication history, using a neighbor-joining approach.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lusheng Wang , Ying Xu
A Neighbor Joining Approach for Reconstructing Tandem Duplication History
:: DESCRIPTION
DeCoSTAR is a program designed to study the evolution of links between genes (i.e., adjacencies) .
::DEVELOPER
Computational Methods for Paleogenomics and Comparative Genomics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Duchemin W, Anselmetti Y, Patterson M, Ponty Y, Bérard S, Chauve C, Scornavacca C, Daubin V, Tannier E.
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.
Genome Biol Evol. 2017 May 1;9(5):1312-1319. doi: 10.1093/gbe/evx069. PMID: 28402423; PMCID: PMC5441342.
:: DESCRIPTION
MetaBAT is an efficient tool for accurately reconstructing single genomes from complex microbial communities.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
Kang DD, Froula J, Egan R, Wang Z.
PeerJ. 2015 Aug 27;3:e1165. doi: 10.7717/peerj.1165.
:: DESCRIPTION
ModEnt is a computational tool that reconstructs gene regulatory networks from high throughput experimental data.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Karlebach, G. and Shamir, R.,
Constructing logical models of gene regulatory networks by integrating transcription factor-DNA interactions with expression data: an entropy based approach.
Journal of Computational Biology.2012 Jan;19(1):30-41.
:: DESCRIPTION
kGEM (k-Genotype Expectation Maximization algorithm) tool finds haplotypes for Single-amplicon sequencing data. This tool requires aligned reads in special internal format and auxiliary program ERIF could help to convert reads in this format either from fasta (unaligned) format or from SAM (pairwise alignment) format.
::DEVELOPER
Georgia State University NGS Research Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
