ePEST leverages on the statistical powerful of r-scan for detecting binding peaks with son-3’-end reads and Chernoff inequality for identifying precise borders with exo-5′-end reads, respectively. The detected borders are further modelled as graphical components and classified into distinct border patterns based on their orientation and spacing.
:: MORE INFORMATION
Ye Z, Chen Z, Sunkel B, Frietze S, Huang TH, Wang Q, Jin VX.
Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.
Nucleic Acids Res. 2016 Sep 19;44(16):7540-54. doi: 10.1093/nar/gkw659. Epub 2016 Jul 25. PMID: 27458208; PMCID: PMC5027512.