CLaMS / iClaMS – Classifier for Metagenomic Sequences

CLaMS / iClaMS

:: DESCRIPTION

ClaMS is a metagenome binning/clustering tool. It bins sequences to user-defined training sets by comparing signatures computed from their composition.

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iClaMS consists of a Perl wrapper script that separates a sequence set into bins by training on the sequence set itself. Directions for running both ClaMS and iClaMS are included in the README in the tar archive.

::DEVELOPER

DOE Joint Genome Institute

:: SCREENSHOTS

ClaMS

::REQUIREMENTS

  • Linux / MacOsX /Windows
  • Java

:: DOWNLOAD

 CLaMS / iClaMS

:: MORE INFORMATION

Citation

ClaMS: A Classifier for Metagenomic Sequences.
Pati A, Heath LS, Kyrpides NC, Ivanova N.
Stand Genomic Sci. 2011 Nov 30;5(2):248-53. doi: 10.4056/sigs.2075298. Epub 2011 Nov 28.