CaBLASTP is a suite of homology search tools, powered by compressively-accelerated protein BLAST, which are significantly faster than and comparably accurate to all known state-of- the-art tools including HHblits, DELTA-BLAST, and PSI-BLAST. Further, our tools are implemented in a manner that allows direct substitution into existing analysis pipelines.
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Bioinformatics. 2013 Jul 1;29(13):i283-90. doi: 10.1093/bioinformatics/btt214.
Compressive genomics for protein databases.
Daniels NM, Gallant A, Peng J, Cowen LJ, Baym M, Berger B.