XSTREAM is a rapid and powerful algorithm for identifying perfect and degenerate tandem repeat motifs in protein (and nucleotide) sequence data. XSTREAM also effectively models the architecture of repetitive domains in tandem repeat proteins and eliminates motif redundancy to identify “fundamental” tandem repeat patterns.
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BMC Bioinformatics. 2007 Oct 11;8:382.
XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences.
Newman AM, Cooper JB.