xPyder 201208 – Analyze Coupled Residues and their networks in Protein Structures

xPyder 201208

:: DESCRIPTION

xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images.

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::DEVELOPER

Papaleo Research Group

:: SCREENSHOTS

xPyder

:: REQUIREMENTS

  • Linux /Windows/ MacOsX
  • Python
  • PyMol

:: DOWNLOAD

 xPyder

:: MORE INFORMATION

Citation

xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
Pasi M, Tiberti M, Arrigoni A, Papaleo E.
J Chem Inf Model. 2012 Jul 23;52(7):1865-74. doi: 10.1021/ci300213c