TRAP is a package integrating all necessary tasks such as mapping short reads, measuring gene expression levels, finding differentially expressed genes (DEGs), clustering and pathway analysis for time-series data in a single environment.
Bio & Health Informatics Lab , Seoul National University
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Jo K, Kwon HB, Kim S.
Time-series RNA-seq analysis package (TRAP) and its application to the analysis of rice, Oryza sativa L. ssp. Japonica, upon drought stress.
Methods. 2014 Jun 1;67(3):364-72. doi: 10.1016/j.ymeth.2014.02.001. Epub 2014 Feb 8. PMID: 24518221.