TEAK 20130207
:: DESCRIPTION
TEAK software suite is an open source GUI software consisting of two modules: Topology Enrichment Analysis frameworK (TEAK) and Query Structure Enrichment Analysis (QSEA). TEAK is used to find biologically activated KEGG subpathways given molecular profiling data whereas QSEA is used to perform hierarchical querying of the KEGG pathways.
::DEVELOPER
Dongxiao Zhu, Ph.D
:: SCREENSHOTS
:: REQUIREMENTS
- Windows/MacOsX
- Matlab
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Judeh, T, Johnson, C, Kumar, A, Zhu, D (2013)
TEAK: Topological Enrichment Analysis frameworK for detecting activated biological subpathways.
Nucleic Acids Res. 2013 Feb 1;41(3):1425-37. , doi: 10.1093/nar/gks1299.
Judeh, T, Nguyen, T and Zhu, D. (2012).
QSEA for fuzzy subgraph querying of KEGG pathways.
in the proceedings of 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB’12