GenomeComp 1.3 – Whole Genome Compare & Visulization Tool

GenomeComp 1.3

:: DESCRIPTION

GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.

It can be easily used to compare, parsing and visualize large genomic sequences, especially closely related genomes such as inter-species or inter-strains. In addition, it can also show other sequence features like repeat sequence distributions in one whole-genome DNA sequence by comparing the genome to itself.

::DEVELOPER

Chinese National Human Genome Center

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows /  Linux / Solaris / IRIX

:: DOWNLOAD

GenomeComp

:: MORE INFORMATION

Citation

Yang, J., Wang, J.H., Yao, Z.J., Jin, Q., Shen, Y., Chen, R.S., 2003.
GenomeComp: a visualization tool for microbial genome comparison.
J. Microbiol. Meth. 54, 423-426.

Evolver – Whole-genome Sequence Evolution Simulator

Evolver

:: DESCRIPTION

Evolver is a collection of programs designed to simulate the evolution of the nucleotide sequence of a whole genome. Evolver simulates the evolution of a representative genome of a species over periods long compared with its generation time.

::DEVELOPER

Robert Edgar , George Asimenos, Serafim Batzoglou and Arend Sidow.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Evolver

:: MORE INFORMATION

N/A