BACH 1.1 – Fast Haplotype Inference via Context Tree Weighting

BACH 1.1

:: DESCRIPTION

BACH (BAyesian context-based Haplotype inference) solves so-called genotype phasing (or haplotype inference) problem. It is based on Bayesian approach to model haplotypes and genotypes with variable order Markov chains. It finds accurate haplotypes for given genotypes by Bayesian maximum a posterior criterion.

::DEVELOPER

Pasi Rastas

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Java

:: DOWNLOAD

 BACH

:: MORE INFORMATION

Citation

Pasi Rastas, Jussi Kollin, Mikko Koivisto
Fast Bayesian Haplotype Inference via Context Tree Weighting
K. Crandall, J. Lagergren (Eds.), Proc. 8th Workshop on Algorithms in Bioinformatics – WABI 2008, pp. 259-270.