Tag: Web Tool

NaviCell – Web Tool for Exploring large maps of Molecular Interactions

NaviCell

:: DESCRIPTION

NaviCell is a web tool for exploring large maps of molecular interactions created in CellDesigner. The tool is characterized by a unique combination of three essential features: efficient map navigation based on Google maps engine, semantic zooming for viewing different levels of details on the map and an integrated blog for collecting the community curation feedbacks.

::DEVELOPER

NaviCell Team

:: SCREENSHOTS

:: REQUIREMENTS

  • any web browser
:: DOWNLOAD

  no (only web service)

:: MORE INFORMATION

Citation

BMC Syst Biol. 2013 Oct 7;7:100. doi: 10.1186/1752-0509-7-100.
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
Kuperstein I1, Cohen DP, Pook S, Viara E, Calzone L, Barillot E, Zinovyev A.

YeastSpotter 2.1 – Yeast Segmentation Web Tool

YeastSpotter 2.1

:: DESCRIPTION

YeastSpotter is a web application for the segmentation of yeast microscopy images into single cells. YeastSpotter is user-friendly and generalizable, reducing the computational expertise required for this critical preprocessing step in many image analysis pipelines.

::DEVELOPER

Alan Moses’ Computational Biology Lab,University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

YeastSpotter

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Nov 1;35(21):4525-4527. doi: 10.1093/bioinformatics/btz402.
YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells.
Lu AX, Zarin T, Hsu IS, Moses AM

Phylemon 2.0 – Web-tools for Molecular Evolution, Phylogenetics, Phylogenomics and Hypothesis testing

Phylemon 2.0

:: DESCRIPTION

Phylemon is the suite of web-tools for molecular evolution, phylogenetics and phylogenomics. It is conceived as a natural response to the increasing demand of data analysis of experimental scientists seeking to add molecular evolution and phylogenetic insight into their research.

::DEVELOPER

Bioinformatics and Genomics Department at CIPF

:: SCREENSHOTS

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 No, Only Web Service

:: MORE INFORMATION

Citation

Sánchez R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutíerrez S, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H.
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W470-4. Epub 2011 Jun 6.