VIPER v1.0.3 – Variant InsPector and Expert Rating tool

VIPER v1.0.3

:: DESCRIPTION

VIPER can be utilised to view variant calls and decide whether or not those are true or false positives. All calls are visualised using IGV, thus enabling fast rating of sv calls.

::DEVELOPER

VIPER team

:: SCREENSHOTS

N/A.

:: REQUIREMENTS

Linux

:: DOWNLOAD

VIPER

:: MORE INFORMATION

Citation

Wöste M, Dugas M.
VIPER: a web application for rapid expert review of variant calls.
Bioinformatics. 2018 Jun 1;34(11):1928-1929. doi: 10.1093/bioinformatics/bty022. PMID: 29346510; PMCID: PMC5972565.

VIPER 1.01 – Exploring and Cleaning Inheritance Inconsistencies within Pedigree/Genotype Data

VIPER 1.01

:: DESCRIPTION

VIPER (Visual Pedigree Explorer) combines an improved ResSpecies algorithm for genotype inheritance checking and inference with a novel space-efficient visualisation of pedigree structure in a desktop tool for exploring then cleaning data errors in pedigree/genotype datasets.

::DEVELOPER

Roslin Bioinformatics

:: SCREENSHOTS

:: REQUIREMENTS

Linux/MacOsX / Windows
Java

:: DOWNLOAD

VIPER

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012;13 Suppl 8:S5. doi: 10.1186/1471-2105-13-S8-S5. Epub 2012 May 18.
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees.
Paterson T, Graham M, Kennedy J, Law A.

VIPER 1.0 – Variability-preserving imputation for Single-cell RNA-seq

VIPER 1.0

:: DESCRIPTION

VIPER is a tool to impute the zero values in single-cell RNA sequencing studies to facilitate accurate transcriptome quantification at the single-cell level.

::DEVELOPER

Chen Group at U Chicago

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
R

:: DOWNLOAD

VIPER

:: MORE INFORMATION

Citation

Chen M, Zhou X.
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies.
Genome Biol. 2018 Nov 12;19(1):196. doi: 10.1186/s13059-018-1575-1. PMID: 30419955; PMCID: PMC6233584.