VASP – Variant Analysis of Sequenced Pedigrees

VASP

:: DESCRIPTION

VASP is a standalone perl software package designed to analyse sequenced pedigrees.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/ Linux /MacOsX
Perl

:: DOWNLOAD

:: MORE INFORMATION

Citation

Reducing the search space for causal genetic variants with VASP: Variant Analysis of Sequenced Pedigrees.
Field MA, Cho V, Cook MC, Enders A, Vinuesa C, Whittle B, Andrews TD, Goodnow CC.
Bioinformatics. 2015 Mar 8. pii: btv135.

cyvcf2 v0.11.5 – Fast, Flexible Variant Analysis with Python

cyvcf2 v0.11.5

:: DESCRIPTION

cyvcf2 is a Python library and software package for fast parsing and querying of VCF and BCF files and illustrate its speed, simplicity and utility.

::DEVELOPER

The Quinlan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOs
Python

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Bioinformatics. 2017 Jun 15;33(12):1867-1869. doi: 10.1093/bioinformatics/btx057.
cyvcf2: fast, flexible variant analysis with Python.
Pedersen BS, Quinlan AR