TPMS – Tree Pattern Matching Suite

TPMS

:: DESCRIPTION

TPMS is a program suite for bioinformatics. It can manage phylogenetic tree collections, root them, query some peculiar pattern, and detect horizontal transfer.

::DEVELOPER

PRABI-Doua

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ MacOsX

:: DOWNLOAD

TPMS

:: MORE INFORMATION

CitationBMC Bioinformatics. 2013 Mar 27;14:109. doi: 10.1186/1471-2105-14-109.
TPMS: a set of utilities for querying collections of gene trees.
Bigot T1, Daubin V, Lassalle F, Perrière G.

FamFetch 2.0 – Search for Tree Patterns in Databases of Phylogenetic Trees

FamFetch 2.0

:: DESCRIPTION

FamFetch is the general interface used to query the families databases developed using the HOBACGEN model.

::DEVELOPER

FamFetch Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/MacOsx
Java

:: DOWNLOAD

FamFetch

:: MORE INFORMATION

Citation

Bioinformatics. 2005 Jun 1;21(11):2596-603. Epub 2005 Feb 15.
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.
Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G.