Tag: Translate

Moksiskaan 2.04 – Translate Gene Sets to Networks

Moksiskaan 2.04

:: DESCRIPTION

Moksiskaan is a generic database that can be used to integrate information about the connections between genes, proteins, pathways, drugs, and other biological entities. Moksiskaan provides various pathway components for Anduril and may be used to extends its capabilities.

::DEVELOPER

Hautaniemi Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Moksiskaan

:: MORE INFORMATION

Citation

Marko Laakso and Sampsa Hautaniemi
Integrative platform to translate gene sets to networks
Bioinformatics (2010) 26 (14): 1802-1803.

CIFTr 2.053 – Translate mmCIF data files into PDB format

CIFTr 2.053

:: DESCRIPTION

CIFTr is an application program for translating files in mmCIF format into files in PDB format.

::DEVELOPER

RCSB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 CIFTr

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2002 Jan 1;30(1):245-8.
The Protein Data Bank: unifying the archive.
Westbrook J, Feng Z, Jain S, Bhat TN, Thanki N, Ravichandran V, Gilliland GL, Bluhm W, Weissig H, Greer DS, Bourne PE, Berman HM.

KinImmerse 0.5 – Translate Kinemage Files into Software for Virtual Environment

KinImmerse 0.5

:: DESCRIPTION

KinImmerse translates the molecular capabilities of the kinemage graphics format into software for display and manipulation in the DiVE (Duke immersive Virtual Environment) or other VR system. KinImmerse is supported by the flexible display construction and editing features in the KiNG kinemage viewer and it implements new forms of user interaction in the DiVE.

In addition to molecular visualizations and navigation, KinImmerse provides a set of research tools for manipulation, identification, co-centering of multiple models, free-form 3D annotation, and output of results.

::DEVELOPER

Richardson Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows /  Linux

:: DOWNLOAD

KinImmerse

:: MORE INFORMATION

For a detailed description see KinImmerse: Macromolecular VR for NMR ensembles.

KinImmerse is free software available under the terms of its own BSD-style license.