Tag: Time-warp

M-align 2.8 – Align two time-series Microarray datasets using Time-warp or Gene-warp alignment matrices

M-align 2.8

:: DESCRIPTION

M-align is to align (non-linear resampling) the input data sets based on alignment matrices (*.ali files, see also Figure 7F) produced by Time-warp or Gene-warp programs. The alignment matrices can also be adjusted/generated manually with the account of E-maps. M-align takes as an input two matrices used to generate alignment matrix (*.ali) or two matrices with equivalent number of columns (time points) plus the alignment matrix (*.ali) itself.

::DEVELOPER

Dmitri Papatsenko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 M-align

:: MORE INFORMATION

Citation

Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.

Time-warp 3.2 – Generate Alignment Matrices

Time-warp 3.2

:: DESCRIPTION

Time-warp is the global alignment program; several alternative methods are available to generate a similarity matrix; a dynamic programming algorithm finds the optimal alignment path through the matrix. As well as the Gene-warp (see above), Time-warp takes as an input two time-series microarray datasets, containing orthologous expression profiles in the corresponding rows of the two matrices.

::DEVELOPER

Dmitri Papatsenko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Time-warp 

:: MORE INFORMATION

Citation

Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.