PeTTSy 1.0 – Perturbation Theory Toolbox for Systems

PeTTSy 1.0

:: DESCRIPTION

PeTTSy is a GUI based Matlab toolbox which implements a wide array of techniques for the perturbation theory and sensitivity analysis of large and complex ordinary differential equation based models.

::DEVELOPER

Warwick Systems Biology Centre

:: SCREENSHOTS

:: REQUIREMENTS

Linux /Windows/ MacOsX
MatLab

:: DOWNLOAD

PeTTSy

:: MORE INFORMATION

Citation

PeTTSy: a computational tool for perturbation analysis of complex systems biology models.
Domijan M, Brown PE, Shulgin BV, Rand DA.
BMC Bioinformatics. 2016 Mar 10;17(1):124. doi: 10.1186/s12859-016-0972-2.

MSMS 3.2rcb122 / MSMSPlay – Coalescent Simlation tool with Selection / Exploration of Basic Population Genetic Theory

MSMS 1.3 / MSMSPlay

:: DESCRIPTION

MSMS is a coalescent simulator that models itself off Hudsons ms in usage and includes selection. It is fast, often faster than ms, and portable running on Mac OSX, windows and Linux. By using this tool, one can study the patterns of selection in complicated demographic scenarios.

MSMSPlay is a GUI designed for simple exploration of basic population genetic theory. Its meant for exploratory runs with some useful output in an interactive fashion.

::DEVELOPER

The Mathematics and BioSciences Group

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / MacOsX
Java

:: DOWNLOAD

MSMS / MSMSPlay

:: MORE INFORMATION

Citation

Ewing G. and Hermisson J. (2010).
MSMS: A coalescent simulation program including recombination, demographic structure, and selection at a single locus.
Bioinformatics 26: 2064-2065.