TarPmiR – microRNA Target Site Prediction

TarPmiR

:: DESCRIPTION

TarPmiR is a miRNA-mRNA binding sites prediction tool, which can utilize miRNA-mRNA binding experiment data such as CLASH (cross-linking ligation and sequencing of hybrids) .

::DEVELOPER

Hu Lab – Data Integration and Knowledge Discovery @ UCF

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux /Windows
Python

:: DOWNLOAD

TarPmiR

:: MORE INFORMATION

Citation:

TarPmiR: a new approach for microRNA target site prediction.
Ding J, Li X, Hu H.
Bioinformatics. 2016 May 20. pii: btw318.

Co-Bind – Identify Target Sites for cooperatively Binding Transcription Factors

Co-Bind

:: DESCRIPTION

Co-Bind (COperative BINDing) is a software for discovering DNA target sites for cooperatively acting transcription factors.

::DEVELOPER

Stormo Lab in Department of Genetics, Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Co-Bind

:: MORE INFORMATION

Citation

Bioinformatics. 2001 Jul;17(7):608-21.
Identifying target sites for cooperatively binding factors.
GuhaThakurta D, Stormo GD.