Tag: Survey

SUGEN v8.1 – Genetic Association Analysis Under Complex Survey Sampling

SUGEN v8.1

:: DESCRIPTION

SUGEN is a command-line software program written in C++ to implement the weighted and unweighted approaches for various types of association analysis under complex survey sampling.

::DEVELOPER

Danyu Lin

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

SUGEN

:: MORE INFORMATION

Citation

Lin DY, Tao R, Kalsbeek WD, Zeng D, Gonzalez F 2nd, Fernández-Rhodes L, Graff M, Koch GG, North KE, Heiss G.
Genetic association analysis under complex survey sampling: the Hispanic Community Health Study/Study of Latinos.
Am J Hum Genet. 2014 Dec 4;95(6):675-88. doi: 10.1016/j.ajhg.2014.11.005. PMID: 25480034; PMCID: PMC4259979.

NuST – Nucleoid Survey Tool

NuST

:: DESCRIPTION

NuST is a set of tools and data sets that can be used to analyze the aggregation of a set of genes along the genome coordinate, at different scales of observation.

::DEVELOPER

Laboratory of Computational and Quantitative Biology(LCQB)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

NuST

:: MORE INFORMATION

Citation

Scolari VF, Zarei M, Osella M, Lagomarsino MC.
NuST: analysis of the interplay between nucleoid organization and gene expression.
Bioinformatics. 2012 Jun 15;28(12):1643-4. doi: 10.1093/bioinformatics/bts201