MemLoci – Subcellular Localization Predictor for Membrane Proteins

MemLoci

:: DESCRIPTION

 MemLoci is a predictor for the subcellular localization of proteins associated or inserted in eukaryotes membranes.

::DEVELOPER

Bologna Biocomputing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 No. Only Web Service

:: MORE INFORMATION

Citation

MemLoci: predicting subcellular localization of membrane proteins in eukaryotes.
Pierleoni A, Martelli PL, Casadio R.
Bioinformatics. 2011 May 1;27(9):1224-30. Epub 2011 Mar 2.

BaCelLo – Predictor for the Subcellular Localization of Proteins in Eukaryotes

BaCelLo

:: DESCRIPTION

BaCelLo (Balanced Subcellular Localization Predictor) is a predictor for the subcellular localization of proteins in eukaryotes. It is based on a decision tree of several support vector machines (SVMs), it classifies up to four localizations for Fungi and Metazoan proteins and five localizations for Plant ones

::DEVELOPER

Bologna Biocomputing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 No, Only Web Service

:: MORE INFORMATION

Citation

BaCelLo: a Balanced subCellular Localization predictor.
Andrea Pierleoni 1, Pier Luigi Martelli1, Piero Fariselli1 and Rita Casadio1
Bioinformatics, 22, e408-e416.

CoBaltDB 1.0 – Complete Bacterial and Archaeal Orfeomes Subcellular Localization Database

CoBaltDB 1.0

:: DESCRIPTION

CoBaltDB (Complete Bacterial and Archaeal Orfeomes Subcellular Localization Database) which aims at presenting the cellular localisation of all prokaryotic proteins of all sequenced genomes, as predicted by numerous bioinformatic localisation tools.

::DEVELOPER

B@SIC (Bioinformatics Applied to Stresses and Cellular Interactions)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac / Linux
  • Java

:: DOWNLOAD

  CoBaltDB

:: MORE INFORMATION

Citation

CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources.
Goudenège D, Avner S, Lucchetti-Miganeh C, Barloy-Hubler F.
BMC Microbiol. 2010 Mar 23;10:88.

MultiLoc2 20091026 – Predict Animal, Plant and Fungal Protein Subcellular Localization

MultiLoc2 20091026

:: DESCRIPTION

MultiLoc2 predicts animal, plant and fungal protein subcellularlocalizations by integrating phylogeny and Gene Ontology terms to the new version of the software.

::DEVELOPER

APPLIED BIOINFORMATICS GROUP

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 MultiLoc2

:: MORE INFORMATION

Citation

Blum, T, Briesemeister, S, and Kohlbacher, O (2009).
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
BMC Bioinformatics, 10:274.