:: DESCRIPTION
RNAexpNumNbors can compute the expected number of neighbors, or expected network degree, of an input RNA sequence.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
J Comput Chem. 2015 Jan 15;36(2):103-17. doi: 10.1002/jcc.23776. Epub 2014 Nov 7.
Expected degree for RNA secondary structure networks.
Clote P
:: DESCRIPTION
RNAborMEA computes the maximum expected accurate δ-neighbors of a given RNA secondary structure for a given RNA sequence. Here, a structure T is a δ-neighbor of a given structure S, if S can be transformed into T by a minimum number δ of edit operations, where an edit operation consists of removing or adding a single base pair (i.e. if the base pair distance between S and T is δ).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Feng Lou and Peter Clote.
Maximum expected accurate structural neighbors of an RNA secondary structure.
Proceedings of 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), Feb 3-5, 2011. Orlando, FL.
