Tag: Structural Clustering

GraphClust 0.7.6 – Structural Clustering of local RNA Secondary Structures

GraphClust 0.7.6

:: DESCRIPTION

GraphClust can be used for structural clustering of RNA sequences. Especially it can be used for clustering of very large dataset with thousands of RNAs.

::DEVELOPER

Freiburg Bioinformatics Group.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  GraphClust

:: MORE INFORMATION

Citation

Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen
GraphClust: alignment-free structural clustering of local RNA secondary structures
Bioinformatics, 2012, 28(12), i224-i232

T-RMSD – Allows fine-grained Structural Clustering of a given group of related Protein Domains

T-RMSD

:: DESCRIPTION

T-RMSD web server (tree-based on root-mean-square deviation) is a service allowing the online computation of structure-based protein classification.

::DEVELOPER

Notredame’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

T-RMSD: a web server for automated fine-grained protein structural classification.
Magis C, Di Tommaso P, Notredame C.
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W358-62. doi: 10.1093/nar/gkt383.