ORDER_AVE – Improving Orientation-dependent Statistical Potential using Reference State

ORDER_AVE

:: DESCRIPTION

ORDER_AVE is a reasonable reference state for the orientation-dependent statistical potentials: using the average geometric relationship between atom pairs in known structures by neglecting their residue identities.

::DEVELOPER

Dr. Gong’s Lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

ORDER_AVE

:: MORE INFORMATION

Citation

Proteins. 2014 Oct;82(10):2383-93. doi: 10.1002/prot.24600. Epub 2014 Jun 3.
Improving the orientation-dependent statistical potential using a reference state.
Liu Y1, Zeng J, Gong H.

EPAD – Context-specific Distance-dependent Statistical Potential for Protein Study

EPAD

:: DESCRIPTION

EPAD is an innovative position-specific distance-dependent statistical potential for protein structure and functional study. EPAD has different energy profiles for the same type of atom pairs, depending on their sequence positions.

::DEVELOPER

Xu group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

EPAD

:: MORE INFORMATION

Citation:

Feng Zhao, Jinbo Xu,
A Position-Specific Distance-Dependent Statistical Potential for Protein Structure and Functional Study,
Structure, Volume 20, Issue 6, 6 June 2012, Pages 1118-1126, ISSN 0969-2126