:: DESCRIPTION
SSP (Strand-shift Profile) is a tool for quality assessment of ChIP-seq data without peak calling.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Nakato R, Shirahige K.
Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile.
Bioinformatics. 2018 Jul 15;34(14):2356-2363. doi: 10.1093/bioinformatics/bty137. PMID: 29528371.
:: DESCRIPTION
SSP is a de novo transcriptome assembler that assembles RNA-seq reads into transcripts. SSP aims to reconstructs all the alternatively spliced isoforms and estimates the expression level of them.
::DEVELOPER
School of Biological Sciences, Iran
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The SSP is an algorithm that combines chemical shifts from different nuclei into a score, which reflects the expected fraction of α- or β-structure.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Protein Sci. 2006 Dec;15(12):2795-804. Epub 2006 Nov 6.
Sensitivity of secondary structure propensities to sequence differences between alpha- and gamma-synuclein: implications for fibrillation.
Marsh JA, Singh VK, Jia Z, Forman-Kay JD.
:: DESCRIPTION
SSP is a software of SUMO Substrates Prediction. Small Ubiquitin-related MOdifier (SUMO) proteins are ubiquitously expressed in eukaryotic cells (Melchior F. et al., 2003), and implicatedly regulate various cellular processes, e.g. stress responsing (Huang TT et al., 2003), cell-cycle progression (Muller S et al., 2001; Pinsky BA et al., 2002; Seeler JS et al., 2003), and gene expression (Muller S et al., 2004), etc.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Fengfeng Zhou, Yu Xue, Hualei Lu, Guoliang Chen, Xuebiao Yao.
A genome-wide analysis of sumoylation-related biological processes and functions in human nucleus.
FEBS Lett. 2005 Jun 20;579(16):3369-75.
