dSpliceType 2.0.0 – Detect various types of differential Splicing Events using RNA-Seq

dSpliceType 2.0.0

:: DESCRIPTION

dSpliceType is a fast, effective and accurate computational method to detect various types of differential splicing and differential expression events between two conditions using RNA-Seq

::DEVELOPER

Dongxiao Zhu, Ph.D

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows/MacOsX
Java

:: DOWNLOAD

dSpliceType

:: MORE INFORMATION

Citation:

A generalized dSpliceType framework to detect differential splicing and differential expression events using RNA-Seq.
Zhu D, Deng N, Bai C.
IEEE Trans Nanobioscience. 2015 Mar;14(2):192-202. doi: 10.1109/TNB.2015.2388593.

SpliCQ 1.0 – Predict Alternative Splicing Events in Next Generation Sequencing data

SpliCQ 1.0

:: DESCRIPTION

SpliCQ can be used to analyse next generation sequencing reads for the expression of alternative splice variants by scoring the observations (reads) with known gene models (expectations) and novel gene models predicted based on the observations. Therefore the score allows to identify the most likely expressed isoforms in a tissue or cell line.

::DEVELOPER

SpliCQ team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/MacOsX
Java

:: DOWNLOAD

SpliCQ

:: MORE INFORMATION

SplAdder 2.4.0 – Detection and Quantification of Alternative Splicing Events from RNA-Seq data

SplAdder 2.4.0

:: DESCRIPTION

SplAdder is the short form of Splice Adder and describes a tool that augments a given annotation of a genome based on evidence from RNA-Seq alignment data.

::DEVELOPER

Rätsch Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / WIndows / MacOsX
Python
MatLab

:: DOWNLOAD

SplAdder

:: MORE INFORMATION

Citation

SplAdder: Identification, quantification and testing of alternative splicing events from RNA-Seq data.
Kahles A, Ong CS, Zhong Y, Rätsch G.
Bioinformatics. 2016 Feb 11. pii: btw076.