Tag: Splice Graph

SpliceGrapher 0.2.7 – Creat Splice Graphs from RNA-Seq data

SpliceGrapher 0.2.7

:: DESCRIPTION

SpliceGrapher is a tool for predicting splice graphs and alternative splicing patterns using next generation sequencing data, guided by gene models and EST data.

::DEVELOPER

Asa Ben-Hur

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 SpliceGrapher

:: MORE INFORMATION

Citation

Genome Biol. 2012 Jan 31;13(1):R4. [Epub ahead of print]
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.
Rogers MF, Thomas J, Reddy AS, Ben-Hur A.

PSGInfer 1.2.1 – Inference of Alternative Splicing from RNA-Seq data with probabilistic Splice Graphs

PSGInfer 1.2.1

:: DESCRIPTION

PSGInfer (Probabilistic Splice Graph Inference) analyzes RNA-Seq data with probabilistic splice graph models of alternative RNA processing (transcription initiation, splicing, and polyadenylation).

::DEVELOPER

Laura H. LeGault , Colin Dewey

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

PSGInfer

:: MORE INFORMATION

Citation

Laura H. LeGault and Colin N. Dewey. (2013)
Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.
Bioinformatics. 29(18):2300-2310.