CRISPRtrack 1.0.1

:: DESCRIPTION

CRISPRtrack uses CRISPR spacers as molecular markers to track bacterial strains.It can be used to estimate the microbiome similarity based on the sharing of CRISPR spacer contents between the microbiomes. It can also be used to quantify the retention of donor strains in recipients that receive microbiota transfer treatment (such as fecal microbiota transfer, FMT) using microbiome data.

::DEVELOPER

Yuzhen Ye lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• JRE

:: DOWNLOAD

CRISPRtrack

:: MORE INFORMATION

Citation:

CRISPR J. 2019 Feb 1;2(1):41-50. doi: 10.1089/crispr.2018.0046. Epub 2019 Feb 14.
CRISPRs for Strain Tracking and Their Application to Microbiota Transplantation Data Analysis.
Lam TJ, Ye Y.