Tag: Software

ZEN 2012 Lite – Free of Charge Digital Image Software

ZEN 2012 Lite

:: DESCRIPTION

ZEN (ZEISS Efficient Navigation) is the single user interface you will see on all imaging systems from Carl Zeiss. ZEN 2011 Lite is the free version.The ZEN microscope software leads you simply and quickly to the result. At all times you see which options the system is making available to you and which step is appropriate to take next. Use ZEN imaging software to achieve scientific success: nothing diverts you from your goal – to document your results and reproduce them at any time.

::DEVELOPER

Carl Zeiss

:: SCREENSHOTS

ZEN

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 ZEN

:: MORE INFORMATION

DNAStrider/LabStrider 1.59.2 – DNA Analyze software

DNAStrider 1.59.2

:: DESCRIPTION

DNAStrider (LabStrider) is a free software solution that will help the DNA Strider users to get their data out and perform some basic DNA analyze function.

::DEVELOPER

Yizhou Joseph He ,yizhou@med.unc.edu

:: SCREENSHOTS

DNAStrider

:: REQUIREMENTS

  • Windows / Linux / MacOsX 

:: DOWNLOAD 

 DNAStrider

:: MORE INFORMATION

GENOVA 1.00 – Genome Visualization and Analysis software for detailed Comparison of Genome Functions

GENOVA 1.00

:: DESCRIPTION

Genova is a JAVA-base software to manage, edit, visualize and store the genome sequence locally. All genes or ORFs are categorized by their function and plotted with different colours in a map. Support toolkit includes a sequence-format conversion tool and a sequence GC percent analysis/visualization tool. The software is designed for genome sequence comparisons, which has been proven to be powerful, in particular to prokaryotic genomes of close phylogenetic distances.

::DEVELOPER

the Department of Bioinformatics at the University of Würzburg

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 Genova

:: MORE INFORMATION

Citation

Liang C, Wolz C, Herbert S, Bernhard J, Engelmann S, Hecker M, Götz F, Dandekar T. 2009.
GENOVA: A rapid genome visualization and functional genomics software.
Online Journal of Bioinformatics 10:201-17.

Geppetto – Population Synthesis Software

Geppetto

:: DESCRIPTION

Geppetto is a population synthesis tool. It offers numerous features such as creating populations from different ancestral origins, creating admixed individuals, and finally also a pedigree creation feature.

::DEVELOPER

Amit Tzur (sendwithchibo AT gmail DOT com) , Daneial Anvar (danielanvar AT gmail DOT com) , Laboratory of Computational Biology at the Technion.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

  Geppetto

:: MORE INFORMATION

SequenceAssignCompare 20111109 – Automated MALDI-ISD Protein Sequencing Software

SequenceAssignCompare 20111109

:: DESCRIPTION

SequenceAssignCompare is a software for amino acid sequence determination from MALDI-ISD spectra.

::DEVELOPER

The Mass Spectrometry Laboratory 

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 SequenceAssignCompare

:: MORE INFORMATION

Citation

T. A. Zimmerman, D. Debois, G. Mazzucchelli, V. Bertrand, M. C. De Pauw-Gillet, E. De Pauw.
“An Analytical Pipeline for MALDI In-Source Decay Mass Spectrometry Imaging of Proteins.”
Anal. Chem., 2011, 83, 6090–6097

NoePrimer 3.0 – Primer Design Software

NoePrimer 3.0

:: DESCRIPTION

NoePrimer is designed to specifically meet the growing demand for simplifying increasingly complex primer searches in versatile molecular applications. It makes primer design and analysis so easy with a single mouse click, yet its advanced functions such as multiplex PCR design appeal to demanding needs in the high-throughput research era today.

::DEVELOPER

NoeGen Inc.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

NoePrimer Trial

:: MORE INFORMATION

Order NoePrimer

GeneTerrain – Next-generation Panel Biomarker Discovery and Validation software

GeneTerrain

:: DESCRIPTION

GeneTerrain is a next-generation panel biomarker discovery and validation software.

::DEVELOPER

Discovery Informatics and Computing Laboratory@ Indiana University School of Informatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Please join the mailing group to obtain instructions for downloading a pre-release version of the software.

:: MORE INFORMATION

Citation

You Qian, Shiaofen Fang, and Jake Y. Chen (2008)
GeneTerrain: Visual Exploration of Differential Gene Expression Profiles Organized in Native Biomolecular Interaction Networks
Information Visualization, doi: 10.1057/palgrave.ivs.9500169

fGWAS 2.0 – Functional GWAS software

fGWAS 2.0

:: DESCRIPTION

The fGWAS (Function Genome-wide association study) is a new concept to evaluate additive and dominant effect for every SNP and identify the significant SNPs from huge SNP data

::DEVELOPER

Center for Statistical Genetics, Penn State University

:: SCREENSHOTS

fGWAS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 fGWAS

:: MORE INFORMATION

Citation

Hum Genet. 2011 Jun;129(6):629-39. doi: 10.1007/s00439-011-0960-6. Epub 2011 Feb 4.
A dynamic model for genome-wide association studies.
Das K, Li J, Wang Z, Tong C, Fu G, Li Y, Xu M, Ahn K, Mauger D, Li R, Wu R.

EM3D 2.0 – Software for Electron Microscope Tomography

EM3D 2.0

:: DESCRIPTION

EM3D is an integrated software application designed to facilitate the analysis and visualization of electron microscope (EM) tomography data by cellular and molecular biologists. Such data are collected as a tilt series, a sequence of 2D electron micrographs taken at many tilt angles with respect to the electron beam.

::DEVELOPER

The McMahan Lab

:: SCREENSHOTS

EM3D

:: REQUIREMENTS

  • Windows / MacOSX
  • Java

:: DOWNLOAD

 EM3D

:: MORE INFORMATION

Citaition

Ress, D.B., Harlow, M.L., Marshall, R.M. and McMahan, U.J.
Methods for generating high-resolution structural models from electron microscope tomography data.
Structure: 12 (10):1763-1774, 2004.