PyCogent 1.9 – Software Library for Genomic Biology

PyCogent 1.9

:: DESCRIPTION

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

::DEVELOPER

Knight Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Python

:: DOWNLOAD

 PyCogent

:: MORE INFORMATION

Citation

Knight et al., 2007,
PyCogent: a toolkit for making sense from sequence
Genome Biol, 8, R171.

forester 1.038 – Software Libraries for Phylogenomics and Evolutionary Biology Research

forester 1.038

:: DESCRIPTION

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research.

::DEVELOPER

Christian M Zmasek

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 forester

:: MORE INFORMATION

Citation

Bioinformatics. 2001 Sep;17(9):821-8.
A simple algorithm to infer gene duplication and speciation events on a gene tree.
Zmasek CM, Eddy SR.